The Complete Zwieb Lab Bibliography

1. Möller, K., Zwieb, C., and Brimacombe, R. (1978). Identification of the oligonucleotide and oligopeptide involved in an RNA-Protein cross-link by ultraviolet irradiation of Escherichia coli 30S ribosomal subunits. J. Mol. Biol., 126, 489-506. [Citation]

2. Zwieb, C., and Brimacombe, R. (1978). RNA-Protein cross-linking in Escherichia coli ribosomal subunits: a method for the direct analysis of the RNA-region involved in the cross-link. Nucleic Acids Res., 5, 1189-1203. [Abstract]

3. Zwieb, C., Ross, A., Rinke, J., Meinke, M., and Brimacombe, R. (1978). Evidence for RNA-RNA cross-link formation in Escherichia coli ribosomes. Nucleic Acids Res., 5, 2705-2720. [Abstract]

4. Zwieb, C., and Brimacombe, R. (1979). RNA-Protein cross-linking in Escherichia coli ribosomal subunits: precise location of the nucleotide in 16S RNA which is coupled to protein S7 by ultraviolet irradiation. Nucleic Acids Res., 6, 1775-1790. [Abstract]

5. Maly, P., Rinke, J., Ulmer, E., Zwieb, C., and Brimacombe, R. (1980). Precise location of the site of cross-linking between protein L4 and 23S ribonucleic acid induced by milde ultraviolet irradiation of Escherichia coli 50S ribosomal subunits. Biochem., 19, 4179-4188. [Abstract]

6. Zwieb, C., and Brimacombe, R. (1980). Location of series of intra-RNA cross-links in 16S RNA, induced by ultraviolet irradiation of Escherichia coli 30 S ribosomal subunits. Nucleic Acids Res., 8, 2397-2411. [Abstract]

7. Glotz, C., Zwieb, C., Brimacombe, R., Edwards, K., and Koessel, H. (1981). Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes. Nucleic Acids Res., 9, 3287-3306. [Abstract]

8. Zwieb, C., Glotz, C., and Brimacombe, R. (1981). Secondary structure comparisons between small subunit ribosomal RNA-molecules from six different species. Nucleic Acids Res., 9, 3621-3640. [Abstract]

9. Stiege, W., Zwieb, C., and Brimacombe, R. (1982). Precise location of three intra RNA cross-links in 23S RNA, and one in 5S RNA, induced by treatment of Escherichia coli 50S ribosomal subunits with bis-(2-chloroethyl)-methylamine. Nucleic Acids Res., 10, 7211-7229. [Abstract]

10. Brimacombe, R., Maly, P., and Zwieb, C. (1983). The structure of the ribosomal RNA and its organization relative to ribosomal protein. Prog. Nucl. Acid Res. Mol. Biol., 28, 1-48. [Abstract]

11. Goeringer, H., Wagner, R., Jacob, W., Dahlberg, A. E., and Zwieb, C. (1984). Oligonucleotide directed mutagenesis of Escherichia coli 5S ribosomal RNA: construction of mutant and structural analysis. Nucleic Acids Res., 12, 6935-6950. [Abstract]

12. Stark, M., Gregory, R., Gource, R., Thurlow, D., Zwieb, C., Zimmerman, R., and Dahlberg, A. (1984). Effects of site-directed mutations in the central domain of 16S ribosomal RNA upon ribosomal protein binding, RNA processing and 30S subunit assembly. J. Mol. Biol., 178, 303-322. [Abstract]

13. Zwieb, C., and Dahlberg, A. E. (1984). Structural and functional analysis of Escherichia coli ribosomes containing small deletions around position 1760 in the 23S ribosomal RNA. Nucleic Acids Res., 12, 7135-7152.

14. Zwieb, C., and Dahlberg, A. E. (1984). Point mutations in the middle of 16S ribosomal RNA of Escherichia coli produced by deletion loop mutagenesis. Nucleic Acids Res., 12, 4361-4375. [Abstract]

15. Jemiolo, D. K., Zwieb, C., and Dahlberg, A. E. (1985). Point mutations in the 3' minor domain of 16S rRNA of E. coli. Nucleic Acids Res., 13, 8631-8643. [Abstract]

16. Zwieb, C. (1985). The secondary structure of the 7SL RNA in the signal recognition particle: functional implications. Nucleic Acids Res., 13, 6105-6124. [Abstract]

17. Dahlberg, A., Jacob, W., Santer, M., Zwieb, C., and Jemiolo, D. (1986). Mutagenesis of ribosomal RNA as a method to investigate interactions between rRNA, mRNA and tRNA. Structure and Dynamics of RNA ed.: van Knippenberg P.H. and Hilbers C.W.NATO ASI series A, 110, 265-271.

18. Zwieb, C. (1986). The dynamics of 7SL RNA: A model for the action of signal recognition particle. Endocyt. C. Res., 3, 167-177.

19. Zwieb, C. (1986). Is the 6S RNA of prokaryotes an equivalent to the 7SL RNA of eukaryotes? Endocyt. C. Res., 3, 41-51.

20. Zwieb, C., Jemiolo, D. K., Jacob, W. F., Wagner, R., and Dahlberg, A. E. (1986). Characterization of a collection of deletion mutants at the 3'-end of 16S ribosomal RNA of Escherichia coli. Mol. Gen. Genet., 203, 256-264. [Abstract]

21. Zwieb, C., and Ullu, E. (1986). Identification of dynamic sequences in the central domain of 7SL RNA. Nucleic Acids Res., 14, 4639-4657. [Abstract]

22. Marshallsay, C., and Zwieb, C. (1987). Ribonucleic Acid: properties of a primordial structure in molecular evolution. Endocyt. C. Res., 4, 1-12.

23. Prehn, S., Wiedmann, M., Rapoport, T. A., and Zwieb, C. (1987). Protein translocation across wheat germ microsomal membranes requires an SRP-like component. EMBO J., 6, 2093-2097.

24. Zwieb, C. (1987). 3D-modeling of the 7SL RNA of the signal recognition particle. Mol. Biol. Reports, 12, 221-222.

25. Gentz, R., Kuys, Y., Zwieb, C., Taatjes, D., Bannwarth, W., Stueber, D., and Ibrahimi, I. (1988). The degradation of three chimeric polypeptides in Escherichia coli is associated with their secretion. J. Bact., 170, 2212-2220. [Abstract]

26. Lingelbach, K., Zwieb, C., Webb, J. R., Marshallsay, C., Hoben, P. J., Walter, P., and Dobberstein, B. (1988). Isolation and characterization of a cDNA clone encoding the 19 kDa protein of signal recognition particle (SRP): expression and binding to 7SL RNA. Nucleic Acids Res., 16, 9431-9442. [Abstract]

27. Zwieb, C. (1988). 3D-modeling of the 7SL RNA of the signal recognition particle. J. Cell. Biochem, Supplement 12D, 27.

28. Zwieb, C. (1988). 4.5S RNA of E. coli and the conserved central domain of signal recognition particle RNA are homologous. Endocyt. C. Res., 5, 327-336.

29. Zwieb, C. (1988). Possible interactions between signal recognition particle and the ribosome: a model for protein translocation. Mol. Cell. Biol. (Life Sci. Adv.), 7, 159-163.

30. Campos, N., Palau, J., and Zwieb, C. (1989). Diversity of 7SL RNA from the signal recognition particle of maize endosperm. Nucleic Acids Res., 17, 1573-1588. [Abstract]

31. Kim, J., Zwieb, C., Wu, C., and Adhya, S. (1989). Bending of DNA by gene regulatory protein: construction and use of a DNA bending vector. Gene, 85, 15-23. [Abstract]

32. Marshallsay, C., Prehn, S., and Zwieb, C. (1989). cDNA cloning of the wheat germ SRP 7S RNAs. Nucleic Acids Res., 17, 1771. [Abstract]

33. Orban, L., Sullivan, J. V., Zwieb, C., and Chrambach, A. (1989). A thin layer multislab polyacrylamide gel electrophoresis apparatus for Ferguson plot analysis at the sub-microgram load level. Electrophoresis, 10, 726-729. [Abstract]

34. Zwieb, C. (1989). Structure and function of signal recognition particle RNA. Prog. Nucl. Acid Res. Mol. Biol., 37, 207-234. [Abstract]

35. Zwieb, C., Kim, J., and Adhya, S. (1989). DNA bending by negative regulatory proteins: Gal and Lac repressors. Genes and Development, 3, 606-611. [Abstract]

36. Zwieb, C., and Schüler, D. (1989). Low resolution three-dimensional models of the 7SL RNA of the signal recognition particle, based on an intramolecular cross-link introduced by mild irradiation with ultraviolet light. Biochem. and Cell Biol., 67, 434-442. [Abstract]

37. Zwieb, C., and Brown, R. S. (1990). Absence of substantial bending in the Xenopus laevis transcription factor IIIA-DNA complex. Nucleic Acids Res., 18, 583-587. [Abstract]

38. Larsen, N., and Zwieb, C. (1991). SRP-RNA sequence alignment and secondary structure. Nucleic Acids Res., 19, 209-215. [Abstract]

39. Orban, L., Chrambach, A., Zwieb, C., and Adhya, S. (1991). Detection of conformational and net charge differences in DNA-protein complexes by quantitative electrophoresis on polyacrylamide-agarose copolymer gels. Electrophoresis, 12, 391-396. [Abstract]

40. Zwieb, C. (1991). Interaction of protein SRP19 with signal recognition particle RNA lacking individual RNA helices. Nucleic Acids Res., 19, 2955-2960. [Abstract]

41. Zwieb, C. (1991). A basic region neighboring the lysine-rich C-terminus of protein SRP19 is required for binding to signal recognition particle RNA. Biochem. and Cell Biol., 69, 649-654. [Abstract]

42. Zwieb, C., Kim, J., and Adhya, S. (1991). Detection of bending of a DNA by gel electrophoresis: use of plasmid vectors in: A laboratory guide to in vitro studies of protein-DNA interactions J. P. Jost and H.P. Saluz (eds.). BioMethods Series (Birkhaeuser Verlag), 5, 245-257.

43. Idell, S., Zwieb, C., Boggaram, J., Holiday, D., Johnson, R., and Raghu, G. (1992). Mechanisms of fibrin formation and lysis by human lung fibroblasts: influence of TGF-beta and TNF-alpha. American J. Physiol., 263, L487-L494. [Abstract]

44. Idell, S., Zwieb, C., Kumar, A., Koenig, K., and Johnson, A. (1992). Pathways of fibrin turnover of human pleural mesothelial cells in vitro. Am. J. Resp. Cell Mol. Biol., 7, 414-426. [Abstract]

45. Zwieb, C. (1992). Conformity of RNAs that interact with tetranucleotide loop binding proteins. Nucleic Acids Res., 20, 4397-4400. [Abstract]

46. Zwieb, C. (1992). Recognition of a tetranucleotide loop of signal recognition particle RNA by protein SRP19. J. Biol. Chem., 267, 15650-15656. [Abstract]

47. Zwieb, C., and Larsen, N. (1992). The signal recognition particle (SRP) database. Nucleic Acids Res., 20, Supplement, 2207. [Abstract]

48. Larsen, N., and Zwieb, C. (1993). The signal recognition particle database (SRPDB). Nucleic Acids Res., 21, 3019-3020. [Abstract]

49. Chittenden, K., Black, S., and Zwieb, C. (1994). Systematic site-directed mutagenesis of protein SRP19: identification of the residues essential for binding to signal recognition particle RNA. J. Biol. Chem., 269, 20497-20502. [Abstract]

50. Zwieb, C., and Adhya, S. (1994) Improved plasmid vectors for the analysis of protein-induced DNA bending. Methods Mol. Biol. 30, 281-294 (1994) [Abstract]

51. Idell, S., Kumar, A., Zwieb, C., Holiday, D., Koenig, K., and Johnson, R. (1994). Effects of TGF-beta and TNF-alpha on procoagulant and fibrinolytic pathways of human tracheal epithelial cells. American J. Physiol., 267, L693-L703. [Abstract]

52. Zwieb, C. (1994). Site-directed mutagenesis of signal recognition particle RNA: identification of the nucleotides in helix 8 required for interaction with protein SRP19. Eur. J. Biochem., 222, 885-890. [Abstract]

53. Zwieb, C., and Adhya, S. (1994) Improved plasmid vectors for the analysis of protein-induced DNA bending. In G. G. Kneale (Eds.), DNA-protein Interactions: principles and protocols (pp. 281-294). Totowa, NJ: Humana Press Inc.

54. Zwieb, C., and Larsen, N. (1994). The signal recognition particle database (SRPDB). Nucleic Acids Res., 22, 3483-3487. [Abstract]

55. Kerfoot P. Walker III, Shaun D. Black, and Christian Zwieb (1995). Cooperative Assembly of Signal Recognition Particle RNA with Protein SRP19. Biochemistry, 34, 11989-11997. [Abstract]

56. Sakakibara, Y., Takami, Y., Zwieb, C., Nakayama, T., Suiko, M., Nakajima, H., and Liu, M-C. (1995). Purification, characterization and molecular cloning of a novel rat Dopa/Tyrosine Sulfotransferase. J. Biol. Chem., 270, 30470-30478. [Abstract]

57. Zwieb, C. (1996). The uRNA database. Nucleic Acids Res., 24, 76-79. [Abstract]

58. Larsen, N., and Zwieb, C. (1996). The signal recognition particle database (SRPDB). Nucleic Acids Res., 24, 80-81. [Abstract]

59. Zwieb, C., Müller, F., and Larsen, N. (1996). Comparative analysis of tertiary structure elements in signal recognition particle RNA. Folding & Design, 1, 315-324. [Abstract]

60. Henry, K., Zwieb, C., and Fried, H. (1997). Purification and Biochemical Characterizarion of the 19-kDa Signal Recognition Particle RNA-binding protein expressed as a Hexahistidine-tagged Polypeptide in Escherichia coli. Protein Expression and Purification, 9, 15-26. [Abstract]

61. Zwieb, C. (1997). The uRNA database. Nucleic Acids Res., 25, 102-103. [Abstract]

62. Zwieb, C., and Larsen, N. (1997). The signal recognition particle database (SRPDB). Nucleic Acids Res., 25, 107-108. [Abstract]

63. Gowda, K., Chittenden, K., and Zwieb, C. (1997). Binding site of the M-domain of human protein SRP 54 determined by systematic site directed mutagenesis of signal recognition particle RNA. Nucleic Acids Res., 25, 388-394. [Abstract]

64. Black, S.D., Gowda, K., Chittenden, K., Walker III K. P., and Zwieb, C. (1997). Identification of an RNA binding-region in the N-domain of signal recognition particle protein SRP19. Eur. J. Biochem., 245, 564-572. [Abstract]

65. Chittenden, K., Gowda, K., Black, S.D., and Zwieb, C. (1997) Interaction of rice and human SRP19 polypeptides with signal recognition particle RNA. Plant Mol. Biol., 34, 507-515. [Abstract]

66. Gowda, K., and Zwieb, C. (1997) Determinants of a protein-induced RNA switch in the large domain of signal recognition particle identified by systematic site-directed mutagenesis. Nucleic Acids Res., 25, 2835-2840. [Abstract]

67. Zwieb, C., and Müller, F. (1997) Three-dimensional comparative modeling of RNA. Nucleic Acids Symposium Series, No. 36, 69-71. [Abstract]

68. Zwieb, C., Gowda, K., Larsen, N., Müller, F. (1997) Comparative modeling of the three-dimensional structure of signal recognition particle RNA. in: "Molecular Modeling of Nucleic Acids", ACS Symposium Series, eds. Leontis, N.B. & SantaLucia, J. Jr., American Chemical Society, Washington, DC, Vol. 682, 405-413.

69. Gowda, K., Black, S.D., Moeller, I., Sakakibara, Y., Liu, M-C., Zwieb, C. (1998) Protein SRP54 of human signal recognition particle: cloning, expression and comparative analysis of functional sites. Gene, 207, 197-207. [Abstract]

70. Larsen, N., Samuelson, T., and Zwieb, C. (1998) The signal recognition particle database. Nucleic Acids Res., 26, 179-180. [Abstract]

71. Zwieb, C., Larsen, N., and Wower, J. (1998). The tmRNA database. Nucleic Acids Res., 26, 168-169. [Abstract]

72. Samuelsson, T., and Zwieb, C. (1999) The signal recognition particle database. Nucleic Acids Res., 27, 169-170. [Abstract]

73. Wower, J., and Zwieb, C. (1999). The tmRNA database. Nucleic Acids Res., 27, 167. [Abstract]

74. Gowda, K., Clemons, W. J., Zwieb, C., and Black, S.D. (1999) Expression, purification, and crystallization of the conserved methionine-rich domain of human signal recognition particle 54 kDa protein. Protein Science, 8, 1144-1151. [Abstract]

75. Zwieb C., Wower I., and Wower, J. (1999) Comparative Sequence Analysis of tmRNA. Nucleic Acids Res., 27, 2063-2071. [Abstract]

76. Clemons, W.J., Gowda, K., Black, S.D., Zwieb, C., and Ramakrishnan, V. (1999) Crystal structure of the conserved subdomain of human protein SRP54M at 2.1Å resolution: Evidence for the mechanism of signal peptide binding. JMB, 292, 697-705. [Abstract]

77. Wower, J., Wower, I.K., and Zwieb, C. (1999) An extended hybrid model for translocation of tRNA and the structure of peptidyl transferase of the Escherichia coli ribosome. Nucleic Acids Symposium Series, No. 41, 187-191.

78. Zwieb, C., Müller, F., and Wower, J. (1999) Comparative three-dimensional modeling of tmRNA. Nucleic Acids Symposium Series, No. 41, 200-204.

79. Zwieb, C. and Wower, J. (2000) tmRDB (tmRNA database). Nucleic Acids Res. 28, 169-170 [Abstract]

80. Zwieb, C. and Samuelsson, T. (2000) SRPDB (Signal Recognition Particle database). Nucleic Acids Res. 28, 171-172. [Abstract]

81. Politz, J.C., Yarovoi,S. M., Kilroy, S., Gowda, K., Zwieb, C. and Pederson, T. (2000) Signal Recognition Particle Components in the Nucleolus. PNAS, 97, 55-60. [Abstract]

82. Bhuiyan, S., Gowda, K., Hotokezaka, H. & Zwieb, C. (2000) Assembly of archaeal signal recognition particle from recombinant components. Nucleic Acids Res. 28, 1365-1373. [Abstract]

83. Wower, J., Zwieb, C., and Wower, I. K. (2000). tmRNA: A Case of Structural and Functional Mimicry on and off the Ribosome? In: The Ribosome: Structure, Function, and Cellular Interactions (Garrett, R. A., et al, eds.), ASM Press, Washington, D.C., 397-405

84. Wower, I.K., Zwieb, C., and Wower, J. (2000) Binding and cross-linking of tmRNA to ribosomal protein S1 on and off the Escherichia coli ribosome: implication of S1 in tmRNA function. EMBO J. 19, 6612-6621. [Abstract]

85. Gorodkin, J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2001) SRPDB (Signal Recognition Particle Database). Nucleic Acids Res. 29, 169-170. [Abstract]

86. Knudsen, B., Wower, J., Zwieb, C., and Gorodkin, J. (2001) tmRDB (tmRNA database). Nucleic Acids Res. 29, 171-172. [Abstract]

87. Bhuiyan, S.H., Pakhomova, O.N. Hinck, A.P, and Zwieb, C. (2001) Complexes with truncated RNAs from the large domain of Archaeoglobus fulgidus signal recognition particle. FEMS Microbiology Letters 198, 105-110. [Abstract]

88. Zwieb, C., and Adhya, S. (2001) Plasmid vectors for the analysis of protein-induced DNA bending. In T. Moss (Ed.), DNA-protein Interactions: principles and protocols (second edition). Totowa, NJ: Humana Press Inc. pp 403-416. [PubMed link]

89. Pakhomova, O.P., Cui, Y., Zwieb, C., and Hinck, A.P. (2001) Sequence-specific 1H, 13C and 15N signal assignments and secondary structure of Archaeoglobus fulgidus SRP19. J. Biomol. NMR. 20, 187-188. [PubMed link]

90. Gorodkin, J., Zwieb, C., and Knudsen, B. (2001) Semi automated update and clean up of structural RNA alignment databases. Bioinformatics, 17, 642-645. [Abstract]

91. Zwieb, C., Guven, S.A., Wower, I.K, and Wower, J. (2001) Three-dimensional folding of the tRNA-like domain of Escherichia coli tmRNA. Biochemistry, 40, 9587-9595. [Abstract]

92. Wower, J., Wower, I.K., Kraal, B., and Zwieb, C. (2001) Quality control of the elongation step of protein synthesis by tmRNP. J. Nutr., 131, 2978S-2982S. [Abstract]

93. Yang, C.H, and Zwieb, C. (2001) Swapping of functional domains using a chimeric monster deletion mutagenesis strategy. BioTechniques, 31, 724-728. [PubMed link]

94. Yin, J., Yang, C.H., and Zwieb, C. (2001) Assembly of human signal recognition particle (SRP): overlap of regions required for binding of protein SRP54 and assembly control. RNA, 7, 1389-1396. [Abstract]

95. Samuelsson, T., and Zwieb, C. (2001) SRPDB, Nucleic Acids Res. Database Issue,

96. Wower, J., Knudsen, B., Gorodkin, J., and Zwieb, C., (2001) tmRDB. Nucleic Acids Res. Database Issue,

97. Zwieb, C. and Eichler, J. (2001) Getting on target: The archaeal signal recognition particle. Archaea, 1, 27-34. available at http://archaea.ws/

98. Pakhomova, O.P., Deep, S., Huang, Q., Zwieb, C., and Hinck, A.P. (2002) Solution Structure of Protein SRP19 of Archaeoglobus fulgidus Signal Recognition Particle. J. Mol. Biol. 317, 145-158. [Abstract]

99. Wower, J. Zwieb, C., Hoffman, D.W., and Wower, I.K. (2002) SmpB: A protein that binds to tmRNA and tRNA. Biochemistry, 41, 8826-8836. [Abstract]

100. Huang, Q., Abdulrahman, S., Yin, J., and Zwieb, C. (2002) Interactions of Human Protein SRP54 with Signal Recognition Particle RNA: Modes of Signal Peptide Recognition. Biochemistry, 41, 11362-11371. [Abstract]

101. Tozik, I., Huang Q., Zwieb, C., and Eichler, J. (2002) Reconstitution of the signal recognition particle of the halophilic archaeaon Haloferax volcanii. Nucleic Acids Res, 30, 4166-4175. [Abstract]

102. Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2003) SRPDB (Signal Recognition Particle Database), Nucleic Acids Res, 31, 363-364. [Abstract]

103. Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2003) tmRDB (tmRNA database) Nucleic Acids Res, 31, 446-447. [Abstract]

104. Zwieb, C. (2003) Signal recognition particle-mediated protein targeting. in: Recent Research Developments in Molecular Biology, Vol. 1, 205-224.

105. Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2004) SRPDB, Nucleic Acids Res., The Molecular Biology Database Collection, 2004 update at http://www3.oup.co.uk/nar/database/summary/248

106. Zwieb, C., Gorodkin, J., Knudsen B., Burks, J., and Wower, J. (2004) tmRDB, Nucleic Acids Res, The Molecular Biology Database Collection, 2004 update at http://www3.oup.co.uk/nar/database/summary/250

107. Alm Rosenblad, M., Zwieb, C., and Samuelsson, T. (2004) Identification and comparative analysis of components from the signal recognition particle in protozoa and fungi. BMC Genomics, 5, 5 [Abstract]

108. Yin, J., Yang, C.H., and Zwieb, C. (2004) Two strategically-placed base pairs in helix 8 of mammalian signal recognition particle RNA are crucial for the SPR19-dependent binding of protein SRP54. RNA, 10, 574-580 [Abstract]

109. Yin, J., Huang, Q., Pakhomova, O.P., Hinck, A.P. and Zwieb, C. (2004) The conserved adenosine in helix 6 of signal recognition particle RNA initiates SRP assembly. Archaea, 1, 269-276. [Abstract]

110. Okada, T., Wower, I., Zwieb, C., and Kimura, M.(2004) The second OB-fold of ribosomal protein S1 from Escherichia coli contributes to recognition of tmRNA. Biosci. Biotech. Biochem. 68, 2319-2325 [Abstract]

111. Iwona K. Wower, I.K., Zwieb, C., and Wower, J. (2004) Contributions of pseudoknots and protein SmpB to the structure and function of tmRNA in trans-translation. JBC, 279, 54202-54209. [Abstract]

112. Iakhiaeva, E, Yin, J., and Zwieb, C. (2005) Identification of an RNA binding domain in human SRP72. JMB, 345, 659-666. [Abstract]

113. Zwieb, C., van Nues, R.W., Rosenblad, M.A., Brown, J., and Samuelsson, T. (2005) A nomenclature for all signal recognition particle RNAs. RNA, 11, 7-13. [Abstract]

114. Alm Rosenblad, M., Gorodkin J., Knudsen, B., Zwieb, C., and Samuelsson, T. (2005) SRPDB, Nucleic Acids Res., The Molecular Biology Database Collection, 2005 update [Abstract]

115. Burks, J., Zwieb, C., and Wower, J. (2005) tmRDB, Nucleic Acids Res, The Molecular Biology Database Collection, 2005 update [Abstract]

116. Wower, I.K., Zwieb, C., and Wower, J. (2005) Transfer-messenger RNA unfolds as it transits the ribosome. RNA, 11, 668-673. [Abstract]

117. Burks, J., Zwieb, C., Müller, F., Wower, I.K., and Wower, J. (2005) Comparative three-dimensional modeling of tmRNA. BMC Mol. Biol., 6, 14 [Abstract]

118. Andersen, E.S., Rosenblad, M.A., Larsen,, N., Westergaard, J.C., Burks, J., Wower, I.K., Wower, J., Gorodkin, J., Samuelsson, T., and Zwieb, C. (2006) The tmRDB and SRPDB resources. Nucleic Acids Res. 34, D163-D168 [Abstract]

119. Iakhiaeva, E., Bhuiyan, S.H., Yin, J, and Zwieb, C. (2006) Protein SRP68 of human signal recognition particle: Identification of the RNA and SRP72-binding domains. Protein Science 15, 1-13 [Abstract]

120. Andersen ES, Lind-Thomsen A, Knudsen B, Kristensen SE, Havgaard JH, Torarinsson E, Larsen N, Zwieb C, Sestoft P, Kjems J, and Gorodkin J. (2007) Semiautomated improvement of RNA alignments. RNA 13,1850-1869 [Abstract]

121. Iakhiaeva, E., and Zwieb, C. (2007) Characterization of protein-RNA complexes using QIAGEN Ni NTA paramagnetic agarose beads. QIAGEN News 2007 e15. [Article]

122. Yin, J, Iakhiaeva, E., Menichelli, E., and Zwieb, C. (2007) Identification of the RNA binding regions of SRP68/72 and SRP72 by systematic mutagenesis of human SRP RNA. RNA Biol. 4, 154-159. [Abstract]

123. Iakhiaeva, E., Wower, J., Wower, I.K. and Zwieb, C. (2008) The 5e motif of eukaryotic signal recognition particle RNA contains a conserved adenosine for the binding of SRP72. RNA, 14, 1143-1153. [Abstract]

124. Wower, J., Wower, I.K., and Zwieb, C. (2008) Making the jump: New insights into the mechanism of trans-translation (Minireview). J. Biol. 7, 17. [Abstract]

125. Ilangovan, U., Bhuiyan, S.H., Hinck, C.S., Hoyle, J., Pakhomova, O.N., Zwieb, C. and Hinck, A.P. (2008) A. fulgidus SRP54 M-domain. J. Biomol. NMR. 4, 241-248. [Abstract]

126. Wower, J., Zwieb, C., and Wower, I.K. (2009) Escherichia coli tmRNA lacking pseudoknot 1 tags truncated proteins in vivo and in vitro. RNA, 15, 128-137. [Abstract]

127. Zwieb, C., and Adhya, S. (2009) Plasmid vectors for the analysis of protein-induced DNA bending. In: T. Moss (Ed.), DNA-protein Interactions: principles and protocols (third edition). Totowa, NJ: Humana Press Inc. Methods Mol. Biol. 543:547-562. [Abstract]

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